Molecular Bioinformatics Center
National Chiao Tung University
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pKNOT v.2
: the protein KNOT web server
protein knot
STRUCTURE QUERY
Enter PDB ID:
or upload file (in
PDB
format):
Advanced options
OPTIONS
Ignore breaks in the chain
Preserve breaks in the chain
OPTIONS
Iteration number
500
100
200
300
400
1000
1500
Collision threshold
0.50
0.20
0.30
0.40
0.60
0.70
0.80
1.00
Residue (specify the starting and the ending residues):
-
SEQUENCE QUERY
Enter FASTA sequence:
>rRNA large subunit methyltransferase: MKCRLIATGERAPSWVAQGFAEYQKRLSHWMPLELVEIEPGLRGKGRDAQRATDDEGRRVLAALPKNAYVIALDVPGRPLSSEQLAQRMEHWRGQGRDLAFLIGGPEGHSAEVLKSASESWSIGPLTLPHMLVRLIVAEQLYRAAAMLANHPYHRA
or upload file (in
FASTA
format):
Contact
Lai YL, Chen CC, Hwang JK. pKNOT v.2: the protein KNOT web server. Nucleic Acids Research, 2012.
Lai YL, Yen SC, Yu SH, Hwang JK. pKNOT: the protein KNOT web server. Nucleic Acids Research, 2007, Vol. 35, W420-W424
